Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.
beans/ BlastDatabase.java BlastQuery.java Configuration.java FastaSequence.java Hit.java SecondaryBlastQuery.java Subhit.java User.java blast/ cmd/ BlastOutputStyle.java PsiBlastCommand.java PsiBlastCommandFactory.java PsiBlastResult.java PsiBlastResultHandler.java PsiBlastXmlParseException.java PsiBlastXmlParser.java PsiblastExecutionException.java Tools.java exec/ PsiBlastExecutor.java PsiBlastExecutorResult.java QBlastExecutor.java SshPsiBlastExecutor.java periodical/ HitsCollection.java JobsManager.java LocalSearchJob.java NCBISearchJob.java qblast/ FormParser.java Parameter.java PsiBlastTextParseException.java PsiBlastTextParser.java QBlast.java QBlastCommand.java QBlastCommandFactory.java QBlastException.java QBlastParser.java QBlastPutResult.java QBlastSearchException.java Tests.java BlastTypes.java CompositionalAdjustments.java SearchLocation.java cache/ Cache.java db/ service/ ResearcherPersistenceService.java ResearcherPersistenceServiceImpl.java TransactionalDirectService.java GlobalDAO.java HibernateUtil.java exceptions/ AuthenticationException.java SshAuthenticationException.java SystemUnavailableException.java periodical/ qblast/ parameters/ Params.java QBlastFilter.java QBlastFormatObject.java QBlastFormatType.java ssh/ SshClient.java utils/ AlignmentsRenderer.java Formatter.java MailSender.java Passwords.java Registry.java SeqUtil.java Utils.java web/ components/ Alignments.java Border.java HelpBox.java InsertNbsp.java Visit.java Configuration.java FastaList.java HitList.java Home.java Login.java NewSequence.java NewUser.java PersistenceProviderPage.java QueryDetails.java ResearcherPage.java ResearcherServlet.java Rights.java SelectionModels.java SequenceList.java Subhits.java UserList.java ViewSequence.java